aMeta Workhsop
7/4/24
Actually it is much more complicated…
And in ancient metagenomics, it is much more complicated…
It would be very hard to authenticate one by one
It is even more complicated in a real situation:
The aMeta Workflow
snakemake in my researchKrakenuniq classification rule as an example
Project name
├── LICENSE
├── README.md <- The top-level README
├── data
│ ├── external <- Data from third party sources.
│ ├── interim <- Intermediate data that has been transformed.
│ ├── processed <- The final, canonical data sets for modeling.
│ └── raw <- The original read only
│
├── docs <- All the document information should go here
│ ├── reports
│ └── presentations
│
├── workflow <- Source code and snakemake rules
│ ├── Snakefile <- A snakefile, should include all sub rules
│ │
│ ├── rules <- Seperate snakefile rules
│ │
│ ├── environments <- Conda environments
│ │
│ └── singularity <- Singularity containers
│
└── results
aMeta Workshop